PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117892.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 467aa    MW: 51305.9 Da    PI: 9.1066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001183103323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F r  nL+ H r H
  XP_009117892.1  83 CEVCNKGFQREQNLQLHRRGH 103
                     *******************88 PP

2zf-C2H211.50.00095158179223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C+k++  +s+ k H + +
  XP_009117892.1 158 NCEKCSKRYAVQSDWKAHSKIC 179
                     6*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.16E-780103No hitNo description
Gene3DG3DSA:3.30.160.608.7E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035558122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.16E-7152177No hitNo description
SMARTSM00355220157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSSSYNNTIS SSSTQSFLLS SAATGSNNFN REETAMTMIQ QPNSVAPPPP PKKRRNQPGN  60
SYPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK  120
VYICPEPTCV HHDPSRALGD LTGIKKHYYR KHGEKKWNCE KCSKRYAVQS DWKAHSKICG  180
TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ESARNPTVSF TAIAAASGGG GRHGFYDGAS  240
SALSHNHFGN NSNTGFTPLA AGYNLNRSSS EKFEDFIPQP TNPYHGPNNF LMQCSSNQGL  300
LAHNDQSLLN QHGMISLGDT ISNNNNNLFN LGNFQLNIKN SDQISAPSLF ADGAENNDPS  360
ALLRGLTSSS SSSAVVNEFG DNVNGNLHGL MNSLATTTDQ QGRSGSSIFD LHFGNNLSMG  420
GSDRLTLDFL GVNGRVMSNV NGRGGRNQAP LDTEMKFSQP NHPFERA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117891.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_009117892.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLM4EDF90.0M4EDF9_BRARP; Uncharacterized protein
STRINGBra026819.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein